※ Protein Information
Tag Content
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 RNA polymerase sigma factor RpoD
Protein Synonyms/Alias
 
Gene Name
 rpoD
Gene Synonyms/Alias
 rpoDA; OrderedLocusNames=PA0576
Created Date
 3-June-2014
Organism
 Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
NCBI Taxa ID
 208964
Phosphorylation
Position
Peptide
Code
Type
References
109 MYMREMGTVELLTRE T HTP [1]
Reference
 [1]Ser/Thr/Tyr phosphoproteome analysis of pathogenic and non-pathogenic Pseudomonas species.
 Ravichandran A,Sugiyama N,Tomita M,Swarup S,Ishihama Y
 Proteomics 2009, May;9(10):2764-75. [PMID:19405024]
Functional Description From UniProt
 FUNCTION: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (By similarity)
Sequence Annotation From UniProt
 
Key Word From UniProt
 Completeproteome; Cytoplasm; DNA-binding; Referenceproteome; Sigmafactor; Transcription; Transcriptionregulation
Protein Sequence
 MSGKAQQQSR LKELIARGRE QGYLTYAEVN DHLPEDISDP EQVEDIIRMI NDMGINVFET 60
 APDADALLLA EADTDEAAAE EAAAALAAVE SDIGRTTDPV RMYMREMGTV ELLTREGEIE 120
 IAKRIEEGIR EVMSAIAQFP GTVDSILADY NRIVAEGGRL SDVLSGYIDP DDGSLPAEEV 180
 EPVNLKDDSA DSKEKDDEEE ESDDSSDSDD EGDGGPDPEE ARLRFTAVSE QLDKAKKALK 240
 KHGRGSKQAT AELTGLAELF MPIKLVPKQF DALVARVRSA LEGVRAQERA IMQLCVRDAR 300
 MPRADFLRLF PNHETDEKWV DSVLKSKPKY AEAIERLRDD ILRNQQKLAA LESEVELTVA 360
 EIKEINRAMS IGEAKARRAK KEMVEANLRL VISIAKKYTN RGLQFLDLIQ EGNIGLMKAV 420
 DKFEYRRGYK FSTYATWWIR QAITRSIADQ ARTIRIPVHM IETINKLNRI SRQMLQEMGR 480
 EPTPEELGER MDMPEDKIRK VLKIAKEPIS METPIGDDED SHLGDFIEDS TMQSPIEMAT 540
 SESLKESTRE VLAGLTAREA KVLRMRFGID MNTDHTLEEV GKQFDVTRER IRQIEAKALR 600
 KLRHPSRSEH LRSFLDE 617
  GO:0005737   C:cytoplasm IEA:UniProtKB-SubCell
  GO:0003677   F:DNA binding IEA:UniProtKB-HAMAP
  GO:0003700   F:sequence-specific DNA binding transcription factor activity IEA:InterPro
  GO:0016987   F:sigma factor activity IEA:UniProtKB-HAMAP
  GO:0001123   P:transcription initiation from bacterial-type RNA polymerase promoter IEA:UniProtKB-HAMAP
  IPR014284   RNA_pol_sigma-70_dom.
  IPR000943   RNA_pol_sigma70.
  IPR009042   RNA_pol_sigma70_r1_2.
  IPR007627   RNA_pol_sigma70_r2.
  IPR007624   RNA_pol_sigma70_r3.
  IPR007630   RNA_pol_sigma70_r4.
  IPR007631   RNA_pol_sigma_70_non-ess.
  IPR007127   RNA_pol_sigma_70_r1_1.
  IPR013325   RNA_pol_sigma_r2.
  IPR013324   RNA_pol_sigma_r3_r4.
  IPR012760   RNA_pol_sigma_RpoD_C.
  IPR028630   Sigma70_RpoD.
  IPR011991   WHTH_DNA-bd_dom.
  PF04546   Sigma70_ner.
  PF03979   Sigma70_r1_1.
  PF00140   Sigma70_r1_2.
  PF04542   Sigma70_r2.
  PF04539   Sigma70_r3.
  PF04545   Sigma70_r4.
  PS00715   SIGMA70_1.
  PS00716   SIGMA70_2.
  PR00046   SIGMA70FCT.